segmentation

Index

Namespaces

• activeSegmentation
• config
• segmentIndex
• segmentLocking
• state
• triggerSegmentationEvents

Functions

• addSegmentationRepresentations
• addSegmentations
• removeSegmentationsFromToolGroup

Namespaces

activeSegmentation

activeSegmentation:

getActiveSegmentationRepresentation

• getActiveSegmentationRepresentation(toolGroupId: string): ToolGroupSpecificRepresentation

• Get the active segmentation representation for the tool group with the given toolGroupId.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group

  Returns ToolGroupSpecificRepresentation

  The active segmentation representation for the tool group.

setActiveSegmentationRepresentation

• setActiveSegmentationRepresentation(toolGroupId: string, segmentationRepresentationUID: string): void

• Set the active segmentation for the given tool group for all its viewports

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group to set the active segmentation for.

  • segmentationRepresentationUID: string

    The id of the segmentation representation to set as active.

  Returns void

config

config:

color

color:

addColorLUT

• addColorLUT(colorLUT: ColorLUT, colorLUTIndex: number): void

• addColorLUT - Adds a new color LUT to the state at the given colorLUTIndex. If no colorLUT is provided, a new color LUT is generated.

  ---

  Parameters

  • colorLUT: ColorLUT

    An array of The colorLUT to set.

  • colorLUTIndex: number

    the index of the colorLUT in the state

  Returns void

getColorForSegmentIndex

• getColorForSegmentIndex(toolGroupId: string, segmentationRepresentationUID: string, segmentIndex: number): Color

• Given a tool group UID, a segmentation representationUID, and a segment index, return the color for that segment. It can be used for segmentation tools that need to display the color of their annotation.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that owns the segmentation representation.

  • segmentationRepresentationUID: string

    The uid of the segmentation representation

  • segmentIndex: number

    The index of the segment in the segmentation

  Returns Color

  A color.

setColorForSegmentIndex

• setColorForSegmentIndex(toolGroupId: string, segmentationRepresentationUID: string, segmentIndex: number, color: Color): void

• Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

  • segmentIndex: number

  • color: Color

  Returns void

setColorLUT

• setColorLUT(toolGroupId: string, segmentationRepresentationUID: string, colorLUTIndex: number): void

• It sets the toolGroup’s segmentationRepresentation to use the provided colorLUT at the given colorLUTIndex.

  ---

  Parameters

  • toolGroupId: string

    the id of the toolGroup that renders the representation

  • segmentationRepresentationUID: string

    the representationUID for the segmentation

  • colorLUTIndex: number

    the index of the colorLUT to use

  Returns void

visibility

visibility:

getSegmentationVisibility

• getSegmentationVisibility(toolGroupId: string, segmentationRepresentationUID: string): boolean | undefined

• Get the visibility of a segmentation data for a given tool group.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that the segmentation data belongs to.

  • segmentationRepresentationUID: string

    The id of the segmentation data to get

  Returns boolean | undefined

  A boolean value that indicates whether the segmentation data is visible or not on the toolGroup

setSegmentationVisibility

• setSegmentationVisibility(toolGroupId: string, segmentationRepresentationUID: string, visibility: boolean): void

• Set the visibility of a segmentation representation for a given tool group. It fires a SEGMENTATION_REPRESENTATION_MODIFIED event.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that contains the segmentation.

  • segmentationRepresentationUID: string

    The id of the segmentation representation to modify its visibility.

  • visibility: boolean

    boolean

  Returns void

setVisibilityForSegmentIndex

• setVisibilityForSegmentIndex(toolGroupId: string, segmentationRepresentationUID: string, segmentIndex: number, visibility: boolean): void

• Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

  • segmentIndex: number

  • visibility: boolean

  Returns void

getGlobalConfig

• getGlobalConfig(): SegmentationRepresentationConfig

• It returns the global segmentation config.

  ---

  Returns SegmentationRepresentationConfig

  The global segmentation config containing the representations config for each representation type and renderInactiveSegmentations flag.

getGlobalRepresentationConfig

• getGlobalRepresentationConfig(representationType: SegmentationRepresentations): RepresentationConfig[LABELMAP]

• Given a representation type, return the corresponding global representation config

  ---

  Parameters

  • representationType: SegmentationRepresentations

    The type of representation to query

  Returns RepresentationConfig[LABELMAP]

  A representation configuration object.

getSegmentSpecificConfig

• getSegmentSpecificConfig(toolGroupId: string, segmentationRepresentationUID: string, segmentIndex: number): RepresentationConfig

• Get the segment specific configuration for the segmentation representation.

  ---

  Parameters

  • toolGroupId: string

    The tool group id where the segmentation representation belongs to.

  • segmentationRepresentationUID: string

    The uid of the segmentation representation

  • segmentIndex: number

    The index of the segment

  Returns RepresentationConfig

  • The configuration for the segment index in the segmentation representation that is shown in the toolGroup’s viewport

getSegmentationRepresentationSpecificConfig

• getSegmentationRepresentationSpecificConfig(toolGroupId: string, segmentationRepresentationUID: string): RepresentationConfig

• Give the segmentation representation UID, return the corresponding config which is shared by all segments in the segmentation representation. This is an optional level of configuration that can be set by the user, by default it will fallback to the toolGroup specific config, if not set, it will fallback to the global config.

  ---

  Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

    The uid of the segmentation representation

  Returns RepresentationConfig

  • The configuration for the representation.

getToolGroupSpecificConfig

• getToolGroupSpecificConfig(toolGroupId: string): SegmentationRepresentationConfig

• Get the toolGroup specific segmentation config

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group

  Returns SegmentationRepresentationConfig

  A SegmentationConfig object.

setGlobalConfig

• setGlobalConfig(segmentationConfig: SegmentationRepresentationConfig): void

• Set the global segmentation config

  ---

  Parameters

  • segmentationConfig: SegmentationRepresentationConfig

    SegmentationConfig

  Returns void

setGlobalRepresentationConfig

• setGlobalRepresentationConfig(representationType: SegmentationRepresentations, config: LabelmapConfig): void

• Set the global configuration for a given representation type. It fires a SEGMENTATION_MODIFIED event.

  ---

  Parameters

  • representationType: SegmentationRepresentations

    The type of representation to set config for

  • config: LabelmapConfig

    The configuration for the representation.

  Returns void

setSegmentSpecificConfig

• setSegmentSpecificConfig(toolGroupId: string, segmentationRepresentationUID: string, config: SegmentSpecificRepresentationConfig): void

• Set the segment specific configuration for the segmentation representation. This configuration, if specified, has higher priority than the segmentation representation specific config, and the toolGroup specific config. The order of priority is: segment specific config > segmentation representation specific config > toolGroup specific config > global config

  ---

  Parameters

  • toolGroupId: string

    The tool group id where the segmentation representation belongs to.

  • segmentationRepresentationUID: string

    The uid of the segmentation representation

  • config: SegmentSpecificRepresentationConfig

    The configuration for the representation. This is an object

  Returns void

setSegmentationRepresentationSpecificConfig

• setSegmentationRepresentationSpecificConfig(toolGroupId: string, segmentationRepresentationUID: string, config: RepresentationConfig): void

• Set the segmentation representation specific configuration for the segmentation representation. This will apply to all segments in the segmentation representation and has higher priority than the toolGroup specific config.

  ---

  Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

    The uid of the segmentation representation

  • config: RepresentationConfig

    The configuration for the representation. This is an object only containing the representation type as key and the config as value.

  Returns void

setToolGroupSpecificConfig

• setToolGroupSpecificConfig(toolGroupId: string, segmentationRepresentationConfig: SegmentationRepresentationConfig): void

• Sets the tool group specific configuration for the segmentation representation. This will apply to all segmentation representations.

  ---

  Parameters

  • toolGroupId: string

    The tool group id where the segmentation representation belongs to.

  • segmentationRepresentationConfig: SegmentationRepresentationConfig

    This is the configuration object that you will use to set the default values for the segmentation representation.

  Returns void

segmentIndex

segmentIndex:

getActiveSegmentIndex

• getActiveSegmentIndex(segmentationId: string): number | undefined

• Get the active segment index for a segmentation in the global state

  ---

  Parameters

  • segmentationId: string

    The id of the segmentation to get the active segment index from.

  Returns number | undefined

  The active segment index for the given segmentation.

setActiveSegmentIndex

• setActiveSegmentIndex(segmentationId: string, segmentIndex: number): void

• Set the active segment index for a segmentation Id. It fires a global state modified event.

  ---

  Parameters

  • segmentationId: string

    The id of the segmentation that the segment belongs to.

  • segmentIndex: number

    The index of the segment to be activated.

  Returns void

segmentLocking

segmentLocking:

getLockedSegments

• getLockedSegments(segmentationId: string): number[] | []

• Get the locked segments for a segmentation

  ---

  Parameters

  • segmentationId: string

    The id of the segmentation to get locked segments for.

  Returns number[] | []

  An array of locked segment indices.

isSegmentIndexLocked

• isSegmentIndexLocked(segmentationId: string, segmentIndex: number): boolean

• Get the locked status for a segment index in a segmentation

  ---

  Parameters

  • segmentationId: string

    The id of the segmentation that the segment belongs to.

  • segmentIndex: number

    The index of the segment

  Returns boolean

  A boolean value indicating whether the segment is locked or not.

setSegmentIndexLocked

• setSegmentIndexLocked(segmentationId: string, segmentIndex: number, locked?: boolean): void

• Set the locked status of a segment index in a segmentation

  ---

  Parameters

  • segmentationId: string

    The id of the segmentation whose segment index is being modified.

  • segmentIndex: number

    The index of the segment to lock/unlock.

  • locked: boolean = true

  Returns void

state

state:

addColorLUT

• addColorLUT(colorLUT: ColorLUT, index: number): void

• Add a color LUT to the segmentation state manager

  ---

  Parameters

  • colorLUT: ColorLUT

    The color LUT array to add.

  • index: number

    The index of the color LUT to add.

  Returns void

addSegmentation

• addSegmentation(segmentationInput: SegmentationPublicInput, suppressEvents?: boolean): void

• It takes a segmentation input and adds it to the segmentation state manager

  ---

  Parameters

  • segmentationInput: SegmentationPublicInput

    The segmentation to add.

  • optionalsuppressEvents: boolean

    If true, the event will not be triggered.

  Returns void

addSegmentationRepresentation

• addSegmentationRepresentation(toolGroupId: string, segmentationRepresentation: ToolGroupSpecificLabelmapRepresentation, suppressEvents?: boolean): void

• Add the given segmentation representation data to the given tool group state. It fires SEGMENTATION_REPRESENTATION_MODIFIED event if not suppressed.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that the segmentation representation is for.

  • segmentationRepresentation: ToolGroupSpecificLabelmapRepresentation

  • optionalsuppressEvents: boolean

    boolean

  Returns void

getColorLUT

• getColorLUT(index: number): ColorLUT | undefined

• Get the color lut for a given index

  ---

  Parameters

  • index: number

    The index of the color lut to retrieve.

  Returns ColorLUT | undefined

  A ColorLUT array.

getDefaultSegmentationStateManager

• getDefaultSegmentationStateManager(): default

• It returns the defaultSegmentationStateManager.

  ---

  Returns default

getGlobalConfig

• getGlobalConfig(): SegmentationRepresentationConfig

• It returns the global segmentation config. Note that the toolGroup-specific configuration has higher priority than the global configuration and overwrites the global configuration for each representation.

  ---

  Returns SegmentationRepresentationConfig

  The global segmentation configuration for all segmentations.

getSegmentSpecificRepresentationConfig

• getSegmentSpecificRepresentationConfig(toolGroupId: string, segmentationRepresentationUID: string, segmentIndex: number): RepresentationConfig

• Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

  • segmentIndex: number

  Returns RepresentationConfig

getSegmentation

• getSegmentation(segmentationId: string): Segmentation | undefined

• Get the segmentation for the given segmentationId

  ---

  Parameters

  • segmentationId: string

    The Id of the segmentation

  Returns Segmentation | undefined

  A GlobalSegmentationData object

getSegmentationRepresentationByUID

• getSegmentationRepresentationByUID(toolGroupId: string, segmentationRepresentationUID: string): ToolGroupSpecificRepresentation | undefined

• Get the segmentation data object for a given tool group and segmentation data UID. It searches all the toolGroup specific segmentation data objects and returns the first one that matches the UID.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that the segmentation data belongs to.

  • segmentationRepresentationUID: string

    The uid of the segmentation representation

  Returns ToolGroupSpecificRepresentation | undefined

  Segmentation Data object.

getSegmentationRepresentationSpecificConfig

• getSegmentationRepresentationSpecificConfig(toolGroupId: string, segmentationRepresentationUID: string): RepresentationConfig

• It returns the segmentation representation specific config which is the same for all the segments

  ---

  Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

    The unique identifier of the segmentation representation.

  Returns RepresentationConfig

  • The segmentation representation specific config.

getSegmentationRepresentations

• getSegmentationRepresentations(toolGroupId: string): ToolGroupSpecificRepresentations | []

• Get the segmentation state for a tool group. It will return an array of segmentation representation objects.

  ---

  Parameters

  • toolGroupId: string

    The unique identifier of the tool group.

  Returns ToolGroupSpecificRepresentations | []

  An array of segmentation representation objects.

getSegmentations

• getSegmentations(): Segmentation[] | []

• Get the segmentations inside the state

  ---

  Returns Segmentation[] | []

  Segmentation array

getToolGroupIdsWithSegmentation

• getToolGroupIdsWithSegmentation(segmentationId: string): string[]

• Get the tool group IDs that have a segmentation representation with the given segmentationId

  ---

  Parameters

  • segmentationId: string

    The id of the segmentation

  Returns string[]

  An array of tool group IDs.

getToolGroupSpecificConfig

• getToolGroupSpecificConfig(toolGroupId: string): SegmentationRepresentationConfig

• Get the segmentation representations config for a given tool group

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that the segmentation config belongs to.

  Returns SegmentationRepresentationConfig

  A SegmentationConfig object.

removeColorLUT

• removeColorLUT(colorLUTIndex: number): void

• Add a color LUT to the segmentation state manager

  ---

  Parameters

  • colorLUTIndex: number

  Returns void

removeSegmentation

• removeSegmentation(segmentationId: string): void

• It removes the segmentation from the segmentation state manager

  ---

  Parameters

  • segmentationId: string

    The id of the segmentation

  Returns void

removeSegmentationRepresentation

• removeSegmentationRepresentation(toolGroupId: string, segmentationRepresentationUID: string): void

• Remove a segmentation representation from the segmentation state manager for a toolGroup. It fires SEGMENTATION_REPRESENTATION_MODIFIED event.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that the segmentation data belongs to.

  • segmentationRepresentationUID: string

    The uid of the segmentation representation to remove. remove.

  Returns void

setGlobalConfig

• setGlobalConfig(config: SegmentationRepresentationConfig, suppressEvents?: boolean): void

• Set the global segmentation configuration. It fires SEGMENTATION_MODIFIED event if not suppressed.

  ---

  Parameters

  • config: SegmentationRepresentationConfig

    The new global segmentation config.

  • optionalsuppressEvents: boolean

    If true, the segmentationGlobalStateModified event will not be triggered.

  Returns void

setSegmentSpecificRepresentationConfig

• setSegmentSpecificRepresentationConfig(toolGroupId: string, segmentationRepresentationUID: string, config: SegmentSpecificRepresentationConfig, suppressEvents?: boolean): void

• Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

  • config: SegmentSpecificRepresentationConfig

  • suppressEvents: boolean = false

  Returns void

setSegmentationRepresentationSpecificConfig

• setSegmentationRepresentationSpecificConfig(toolGroupId: string, segmentationRepresentationUID: string, config: RepresentationConfig, suppressEvents?: boolean): void

• It sets the segmentation representation specific config for all the segments inside the segmentation.

  ---

  Parameters

  • toolGroupId: string

  • segmentationRepresentationUID: string

    The unique identifier of the segmentation representation.

  • config: RepresentationConfig

    The new configuration for the segmentation representation it is an object with keys of different representation types, and values of the configuration for each representation type.

  • suppressEvents: boolean = false

  Returns void

setToolGroupSpecificConfig

• setToolGroupSpecificConfig(toolGroupId: string, config: SegmentationRepresentationConfig, suppressEvents?: boolean): void

• Set the segmentation representation config for the provided toolGroup. ToolGroup specific configuration overwrites the global configuration for each representation. It fires SEGMENTATION_REPRESENTATION_MODIFIED event if not suppressed.

  ---

  Parameters

  • toolGroupId: string

    The Id of the tool group that the segmentation config is being set for.

  • config: SegmentationRepresentationConfig

    The new configuration for the tool group.

  • optionalsuppressEvents: boolean

    If true, the event will not be triggered.

  Returns void

triggerSegmentationEvents

triggerSegmentationEvents:

triggerSegmentationDataModified

• triggerSegmentationDataModified(segmentationId: string, modifiedSlicesToUse?: number[]): void

• Trigger an event that a segmentation data has been modified

  ---

  Parameters

  • segmentationId: string

    The Id of segmentation

  • optionalmodifiedSlicesToUse: number[]

  Returns void

triggerSegmentationModified

• triggerSegmentationModified(segmentationId?: string): void

• Triggers segmentation global state updated event, notifying all toolGroups that the global state has been updated, If a segmentationId is provided the event will only be triggered for that segmentation, otherwise it will be triggered for all segmentations.

  ---

  Parameters

  • optionalsegmentationId: string

    The id of the segmentation that has been updated

  Returns void

triggerSegmentationRemoved

• triggerSegmentationRemoved(segmentationId: string): void

• Trigger an event that a segmentation is removed

  ---

  Parameters

  • segmentationId: string

    The Id of segmentation

  Returns void

triggerSegmentationRepresentationModified

• triggerSegmentationRepresentationModified(toolGroupId: string, segmentationRepresentationUID?: string): void

• Trigger an event on the eventTarget that the segmentation representation for toolGroupId has been updated

  ---

  Parameters

  • toolGroupId: string

    The Id of the toolGroup

  • optionalsegmentationRepresentationUID: string

  Returns void

triggerSegmentationRepresentationRemoved

• triggerSegmentationRepresentationRemoved(toolGroupId: string, segmentationRepresentationUID: string): void

• Trigger an event that a segmentation representation was removed

  ---

  Parameters

  • toolGroupId: string

    The id of the tool group that the segmentation representation was removed from.

  • segmentationRepresentationUID: string

    The UID of the segmentation representation that was removed.

  Returns void

Functions

addSegmentationRepresentations

• addSegmentationRepresentations(toolGroupId: string, representationInputArray: RepresentationPublicInput[], toolGroupSpecificRepresentationConfig?: SegmentationRepresentationConfig): Promise<string[]>

• Set the specified segmentation representations on the viewports of the specified toolGroup. It accepts a second argument which is a toolGroup specific representation configuration.

  ---

  Parameters

  • toolGroupId: string

    The Id of the toolGroup to add the segmentation representations to

  • representationInputArray: RepresentationPublicInput[]

    An array of segmentation representations to add to the toolGroup

  • optionaltoolGroupSpecificRepresentationConfig: SegmentationRepresentationConfig

    The toolGroup specific configuration for the segmentation representations

  Returns Promise<string[]>

addSegmentations

• addSegmentations(segmentationInputArray: SegmentationPublicInput[]): void

• Adds the segmentation to the cornerstone3D segmentation state. It should be noted that segmentations are not added to any toolGroup’s viewports. In order to do so, you should add a “representation” of the segmentation to the toolGroup using addSegmentationRepresentations helper. The reason for this is that there can be multiple representations of the same segmentation (e.g. Labelmap and Contour, etc. - Currently only Labelmap representations is supported).

  ---

  Parameters

  • segmentationInputArray: SegmentationPublicInput[]

    The array of segmentation input, each of which defining the segmentationId and the main representation data for the segmentation.

  Returns void

removeSegmentationsFromToolGroup

• removeSegmentationsFromToolGroup(toolGroupId: string, segmentationRepresentationUIDs?: string[], immediate?: boolean): void

• Remove the segmentation representation (representation) from the viewports of the toolGroup.

  ---

  Parameters

  • toolGroupId: string

    The Id of the toolGroup to remove the segmentation from.

  • optionalsegmentationRepresentationUIDs: string[]

    The UIDs of the segmentation representations to remove.

  • optionalimmediate: boolean

    if True the viewport will be re-rendered immediately.

  Returns void